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Conferences and Events, Research, Salmon

Nigiri Project

Can fish and farms coexist in harmony? Scientists are currently trying to answer this question in the Yolo Bypass, a roughly 60,000-acre expanse of engineered seasonal floodplain habitat that sits upstream of the Sacramento-San Joaquin Delta in California’s Central Valley. This unique area was developed in the 1930s as a bypass for water from the Sacramento River to reduce the risk of flooding in the Sacramento area. It generally floods in the winter or spring when waters from the Sacramento River overflow the Fremont Weir. When the bypass drains in the late spring, the land is used for agriculture (most notably rice farming) and grazing. In recent years, biologists have begun to recognize the area’s importance as winter aquatic habitat for birds, fishes, and other wildlife (Sommer et al. 2001, Feyrer et al. 2006). As part of the Cal-Neva American Fisheries Society annual meeting, held last week in Davis, CA, the Department of Water Resources (DWR) and CalTrout hosted a tour of the Yolo Bypass for fellow fisheries biologists.

Nigiri Project on the Yolo Bypass

A highlight of the tour was stopping by Knaggs Ranch, located just north of the City of Woodland. CalTrout, DWR, and UC Davis have launched a study here investigating the potential to combine current agricultural practices  with floodplain habitat for fish and wildlife in the Yolo Bypass, dubbed “The Nigiri Project” (i.e., “fish on rice”), which has recently received a lot of press. Jacob Katz, from CalTrout and UC Davis, showed off the project site. Researchers have teamed up with farmers to investigate whether productive rice fields farmed during the summer can be managed in the off-season to provide winter habitat for juvenile Chinook salmon. The expansive habitat and somewhat regular flooding events in the Yolo Bypass offer a unique opportunity to test this rotation. They are just finishing the second year of the project, and rice grown on the experimental plots during the first year was harvested last fall (see top photo). Over the past two years this project has documented impressive growth of salmon that lived on the experimental habitat for six weeks: last year they recorded a five-fold weight gain, one of the highest growth rates for Chinook in the region. In 2013, fish were raised in various plots where the rice stubble left over from last year’s harvest was treated in different ways (e.g., stomped down, left as stubble, disked, or fallowed). The team is currently analyzing the results of the rice treatment portion of the study to see if fish benefit from particular rice stubble modifications. The AFS tour attendees observed the study fish before researchers released them into the river.  The fish are outfitted with acoustic tags so scientists can track their survival and migration to the ocean. Project participants are touting the collaboration as a rare win-win-win situation, with benefits for agriculture, wildlife, and flood protection. 

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Conferences and Events

FISHBIO team at AFS Cal-Neva Meeting

The California-Nevada Chapter of the American Fisheries Society (Cal-Neva AFS) recently held its 47th Annual Cal-Neva Conference in Davis, California. This year’s conference focused on the biodiversity of California and Nevada fishes, and provided scientists and managers the opportunity to present research findings and future study ideas. More than one hundred people attended, including several FISHBIO staff. This year’s plenary speakers included Dr. Peter Moyle (University of California, Davis), Steve Parmenter (USFW, Bishop Field Office), Dr. Sean Hayes (NOAA Fisheries, Davis), Dr. Walter Duffy (USGS, Humboldt State University, Arcata), and Dr. Zeb Hogan (University of Nevada, Reno).  Plenary speakers presented topics on the history, status, restoration, conservation, and management of California inland fishes, desert fishes (i.e. pupfish), coastal salmonids, and the world’s large-bodied fishes. 

Many fish populations are imperiled around the world, especially those in California and Nevada. Factors that negatively affect native fishes include habitat loss and degradation, climate change, predation, and interactions with non-native species. Dr. Moyle explained that extinction is a natural event; however, native California fish species are being listed as endangered or threated at an approximate rate of one species per year. Fish assemblages have shifted to be largely comprised of non-native fishes, which can often out-compete the native species due to their phenotypic plasticity (i.e. higher thermal tolerance range, larger body size, etc.), thereby reducing an ecosystem’s biodiversity. Dr. Walter Duffy stated that management must not only consider individual species, but should also incorporate the biodiversity of ecosystems, as well as the diversity within a species. This within-species diversity can include alternative life histories (i.e. Chinook salmon that spawn at different ages) and different races of salmon (i.e. fall run and spring run salmon).  Mr. Steve Parmenter discussed the importance of monitoring trends and effects of management activities, and shared efforts to restore populations of Owens pupfish in Death Valley. 

While the ultimate goal for many fish researchers is to prevent population declines and restore native fish populations, it is also important to consider natural events that cause mortality. As Dr. Sean Hayes put it, “salmon die,” and this is a completely natural event. Dr. Hayes discovered that the majority (85%) of the steelhead that return to spawn on Scott Creek in Santa Cruz, California, come from a small group of fish that spend the summer in an estuary instead of the ocean. Because “fatter” fish are present in high-growth habitats like the estuary, predators also seek out these habitats. Therefore, restoring habitat for salmon may also attract more predators, leading to higher fish mortality. Dr. Zeb Hogan finished the plenary session talking about the status of large Nevada fishes, pointing out that there are no Chinook salmon or Colorado pikeminnow and very few Lahontan cutthroat trout left in Nevada. Dr. Hogan, also renowned for his international research on large-bodied fishes, also discussed the status of large-bodied fishes around the world, such as the critically endangered Mekong giant catfish. The Mekong River watershed contains approximately 1000 different fish species and the majority of large-bodied fishes in the world. However, no single Mekong fish species has had its life history completely described, Dr. Hogan said. This year’s plenary speakers echoed the importance of fish biodiversity in California and Nevada waters, and around the world: managing to conserve biodiversity maximizes our efforts in not only recovering individual species, but also recovering ecosystems.

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Conferences and Events, Fish Report

Point Lobos State Marine Reserve

Underwater state parks. Ecological savings accounts. Noah’s Arks. These were all terms used to describe marine protected areas (MPAs) at the State of the California Central Coast Symposium recently held in Monterey, California. The symposium highlighted research conducted during the five years since California embarked on an ambitious mission in 2007: to establish a coordinated network of ocean areas off-limits to some or all fishing along the entire state coastline. At times controversial, the stakeholder-driven process came to a close last fall when the northernmost, final links in the MPA chain went into effect from Mendocino County to the Oregon border. The Monterey symposium focused on the first section of the MPA network established on the central coast from Pigeon Point to Point Conception in 2007. California’s statewide MPA network is the first of its kind in the country, and other states like Oregon are hoping to follow suit.

“The state of California is recognized as the leader in the design and implementation of MPAs,” said marine scientist Mark Carr from UC Santa Cruz who has played a large role in process. With people around the world watching California’s MPA experiment with interest, Carr said he and other scientists feel a serious responsibility to monitor and evaluate how these conservation and management tools perform. Some of the goals of these protected, “ecological savings accounts” are to serve as refuges for populations of fish, kelp, crabs, and other species to recover from exploitation, to allow older fish to reproduce and help sustain fisheries outside reserve borders, and to provide insurance against changing ocean conditions like those caused by climate change. For the past five years, researchers from around the central coast diligently surveyed the health of the ecosystems inside and outside the central coast MPAs. They measured abalone-like limpets clinging to rocks in the wave splashed intertidal, enlisted the help of volunteer anglers to catch and release fish, and explored the shadowy depths of the MPAs with submarines and camera-equipped robots hundreds of feet below the surface.

So far, their findings are promising. Many species, from black rockfish and lingcod to owl limpets and black abalone, have increased in abundance inside the new MPAs over the past five years. Some species of fish are also larger inside the protected areas, and these larger fish can produce more offspring. A report compiled by the California Ocean Science Trust summarizing these and other scientific findings of MPA monitoring is available as an interactive e-book on the new Ocean Spaces website. One of FISHBIO’S biologists also presented at the symposium, discussing her graduate research studying the feeding habits of gopher rockfish inside and outside of the central coast MPAs (see Gopher (rockfish) guts). These initial assessments of the MPAs are just a prelude of changes to come, as ecosystem recovery can take decades to occur. In addition to their ecological benefits, protecting special coastal places for their intrinsic value  makes economic sense. California’s renowned and much-visited coastline is a huge driver of the state’s ocean economy, worth about $42.9 billion (Kildow 2005). Some symposium speakers stressed that that the economic value of MPAs need be studied explicitly going forward. But from many angles, it appears that this investment in marine conservation is already paying off.

This post featured in our weekly e-newsletter, the Fish Report. You can subscribe to the Fish Report here.

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Conferences and Events, Ecology, Marine, Other Fish Species, Research

gopher rockfish preygopher rockfish

We know the importance of studying what fish eat when it comes to the feeding habits of salmon predators (see What’s for dinner, Last meal, Survival of the biggest). But did you know you can even get a graduate degree studying fish guts? That’s what one of our biologists did. She recently presented the results of her master’s thesis at the State of the California Central Coast Symposium on Marine Protected Areas in Monterey, sharing her research on the diet of the gopher rockfish (Sebastes carnatus). As you can see from the top photo, these fish scarf down quite a smorgasbord.

Gopher rockfish are one of about 60 different species of rockfishes in the genus Sebastes found on the California coast. Rockfish come in an array of colors and are known for their venomous spines, which can pack a stinging poke for an unwary angler. As generalist predators, gopher rockfish eat a diversity of other animals, from crabs, to worms, to fish. In this study, the gopher rockfish was used to study changes that might happen to the food web inside and outside of marine protected areas (MPAs) in central California. Results showed that gopher rockfish diets didn’t differ much inside and outside of these new MPAs, but fish caught at different locations along the coast ate different things. This is likely due to different habitats at these locations, ranging from Año Nuevo to Point Buchon near Morro Bay, which can result in differences in the invertebrate community. The gopher rockfish’s most important prey included brittle stars (a type of sea star), crabs, mysids, and shrimp (Loury 2011).

A gopher rockfish’s last meal is a bit like a window into the community where it lives, which is otherwise difficult to survey. Gopher rockfish often live in rocky holes – similar to a certain small mammal that shares their common name. While SCUBA divers can survey nearshore marine areas to count larger animals, they usually don’t count the many small critters hiding in cracks and crannies. A hungry gopher rockfish can more effectively “sample” these spots. Studying fish diet is a bit like being a detective or an archaeologist, and sometimes you make surprising discoveries (see Opportunistic Meal). The strangest thing found in a gopher rockfish stomach? A handful of strawberry sea anemones. Those might have been an accidental snack – the fish was probably after a brittle star lodged in the anemone clump.

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Conferences and Events

Come out and join us for the 4th annual Stanislaus River Salmon Festival this Saturday, November 3rd (10am-3pm), in the historic town of Knights Ferry, CA. The salmon are migrating up the Stanislaus in numbers we haven’t seen in years, so there should be good opportunities for salmon viewing. There will be activities for children of all ages, as well as food and live music. It’s sure to be a good time. Check out the Salmon Festival Facebook Page for updates and photos from past years.

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Conferences and Events

Today concludes World Water Week, held annually by the Stockholm International Water Institute. One of the seminars was titled, “Addressing the Water-Energy-Food Security Nexus: Challenges and Solutions in (International) River Basins”. The seminar focused on the Mekong Basin and similar systems where rivers and the resources they provide are shared by several nations. Water Week brings together high-level officials and CEOs from multiple sectors, including representatives from governments, financial institutions, industry, the sciences, and conservation groups. This unique forum highlights the many ways that water is integral to human health, economic growth, and biodiversity. For many of us around the world, we simply twist the tap and drinkable water flows. Who knows where it came from? Who knows where it’s going? Though some of us may take water for granted, it influences nearly every aspect of our lives. From the production of bottled beverages, to the cooling of industrial machinery, processing of fabrics, extraction of minerals, fisheries, production of electricity and timber; not to mention agriculture, transportation, recreation, and water for household cooking, cleaning, showering, and drinking; we use a lot of water for a lot of purposes. Apart from the obvious economic benefits to society, aquatic systems also hold their own inherent values, attracting us for their beauty and supporting a wide variety of organisms. As severe droughts are becoming more frequent across the U.S. and the world, perhaps water will be at the forefront of all our minds before long.

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Conferences and Events, Conservation

The North American Congress for Conservation Biology (NACCB) was recently held in Oakland, with a closing reception at the Oakland Museum of California. The Congress was an opportunity for conservation researchers, professionals, and students to gather and discuss cutting-edge work to conserve the Earth’s biodiversity. The talks covered a wide range of taxa and conservation issues, including many presentations about how and whether conservation should be motivated by concepts such as “ecosystem services” which focus on the benefits of nature to humans rather than focusing on the inherent value of nature or rights for species to exist. The Oakland Museum of California and the Bay Area itself were fitting places to hold the events, as California’s economy is highly dependent on natural resources and yet the reason many people choose to live here is because of its natural beauty. The museum offers great exhibits which represent the historic and modern interplay between humans and ecosystems in California. Our fish, wildlife, water, forests, and minerals make the state rich in more ways than dollars can count, providing plenty of motivation to conserve ecosystem services and the inherent value of our biodiversity. The Society for Conservation Biology sponsors regional meetings like the NACCB, international meetings like the International Congress for Conservation Biology, founded the highly ranked journal Conservation Biology, and provides substantial resources for anyone interested in conservation at any level. There are regional sections and local chapters throughout the world, as well discipline-based groups, such as the Freshwater Working Group with plenty of opportunities for involvement.

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Conferences and Events
If you’re having trouble viewing the presentation, you can also downloadit.

Edinburgh, Scotland and the Fisheries Society of the British Isles have just played host to the 6th international meeting which brought leaders, industry, and researchers together to discuss the future sustainability of global fisheries. Presentations on diverse topics included certification standards, inland fisheries, and regional policies, with one of the plenary talks given by Prince Charles. Fisheries have been a primary concern for folks in the UK for most of its history, whether royal or rugby fan. Fish and chips made from Atlantic cod is a quintessential British dish, and fishing has been a major industry. Before the days of hi-tech industrial fishing, Scottish fisherfolk utilized a variety of techniques and shaped their life around the catch. At the Scottish Fisheries Museum we learned of the men and women who made do with the technology of the day. They fished cotton nets boiled with a waterproofing treatment. Cotton bandages were tied with string around the fingers of herring lasses, who moved seasonally depending on the volume of hauls, quickly working to get catches from the boats to the packing barrels. Despite changes in technology and global demand, striving for sustainability of world fisheries means that future generations will have the chance to earn a living from fish and to enjoy the amazing biodiversity found in the world of fishes. 
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Conferences and Events, Conservation

The Freshwater Fish Specialist Group (FFSG) of the World Conservation Union (IUCN) Species Survival Commission has just held its annual meeting in Chester, UK. With diverse attendance, the meeting was a great opportunity to learn about efforts to conserve freshwater fish, from Africa to Australia, and many regions in between. The Mekong was also represented, as FISHBIO’s Conservation Director gave a talk on our work to establish the Mekong Fish Monitoring Network. With generous support from the Chester Zoo, the meeting was a chance to connect with other researchers, learn about different conservation approaches, and devise plans for future initiatives of the FFSG. One of the new goals of the group is to collate metadata for long-term data sets on freshwater fish into one searchable database. So if anyone out there would like to contribute to this effort just drop us a line. Such a resource would be extremely useful for students, researchers, anglers, and resource managers around the world. Historic data can help us to understand how fish populations have changed over time, recognizing that yesteryear’s “status quo” may seem like a myth to us today. In the historic British city of Chester, many things have changed, yet the past was visible all around us. Chester was established over 2,000 years ago, and is home to one of the oldest Roman walls in Britain, which still encircles the city center. In the midst of efforts to understand where we are today, it’s important to remember where we’ve been, recognizing shifting baselines.

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Conferences and Events, Salmon Abundance

The Annual Salmonid Restoration Conference kicked off it’s 30th anniversary last week in Davis, California, with a loud cheer from the audience as Chuck Bonham, the new Director of California Department of Fish and Game, led the crowd in a call-response during the audience participation segment of his unusually animated plenary speech. Not that plenary speeches are necessarily boring, but Bonham’s goal to get the crowd of laid back fisheries biologists from state and federal agencies, universities and consulting companies riled up was definitely uncommon. The annual conference of California’s salmonid biologists was well attended and session topics ranged from the “Genetic effects of hatcheries on Chinook salmon populations in the Central Valley” to  “The role of coastal lagoons and ocean conditions on salmonid restoration”. At times the question and answer sessions would turn into heated debates, especially with regard to the effects of hatcheries on salmon populations, what one plenary speaker Jim Lichatowich called “the myth of hatcheries”. However, the debates remained civil and, as usual, the best discussions occurred over coffee in the courtyard.

Coincidentally, the conference followed on the heels of the Pacific Fishery Management Council’s decision last Thursday to approve California’s longest commercial salmon fishing season in years. Although there are indications that fall-run Central Valley Chinook salmon may be on the rebound, it is important to remember that the ESA listed fish stocks, such as the Sacramento River winter-run and the Central Valley spring-run Chinook, are still at critically low abundances. Conferences like these are important occasions for sharing ideas, sharing information and advancing the conversation on salmonid recovery. In the words of Chuck Bonham, “If all we’re doing is talking to ourselves, we ain’t getting closer to solving our problems.” Of course nothing is solved easily when it comes to California salmon and there is always more to learn.