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Miscellaneous

Lupine on a gravel bar

Spring blooms of lupine lend shades of blue and purple to otherwise featureless gravel bars and dry side channels in watersheds throughout California. Lupines, like many other legumes, don’t rely on soil nitrogen for nutrition. Instead, they have the ability to convert nitrogen gas from the atmosphere into ammonia, a biologically useful form. This ability allows lupines to thrive on infertile substrates, as well as enrich the ground and improve growing conditions for other plants over time.

Of the roughly 300 described species of lupine, the majority contain toxic alkaloids, and lupine poisoning is a common cause of livestock death in the western US. Despite this fact, people have used the bean pods produced by lupines as a food source for thousands of years. Popular in the Mediterranean since Roman times, the beans require a series of steps to leach the toxins before they can be eaten (such as soaking in salt solution or water, sometimes for several weeks).

In modern times, people have cultivated varieties of lupine containing reduced amounts of toxins, particularly in Europe. These beans are increasingly used in vegetarian cuisine and as a substitute for soy. Although we can’t reach for wild lupine as an easy, tasty riverside snack to munch on in the field, a spring bloom is a welcome sight in areas mostly devoid of color the rest of the year.

Lupine

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Miscellaneous

May your holidays be filled with an abundance of joy! Warm wishes from all of us at FISHBIO.

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Miscellaneous

The current series of storms is expected to bring over 20 inches of rainfall to the California Foothills. Stream flows will be on the rise, sending a torrent of plant debris downstream. For the FISHBIO crew, the bad weather means we will be stepping up our effort the ensure fish monitoring projects like our fish counting weirs remain operational. Large debris, like logs, are generally easy to pass over the collapsible fish counting weirs, but the smaller leaves and aquatic vegetation (like the algae our crew has nicknamed Chewbacca fur) require a lot more elbow grease.

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Miscellaneous

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Miscellaneous

As the rainy season approaches, all the oil, grease and sediment that accumulated on streets and sidewalks throughout the summer and fall is washed down city storm pipes and drainage ditches. Many people are under the impression that the water is piped directly to a treatment facility or even a ponding basin, however the water is usually not treated or filtered, and is discharged directly into the nearest body of water. Issues associated with untreated stormwater have been on the rise in recent years. When the Clean Water Act was amended in 1972, non-point source pollution (which comes from many diffuse sources) was not a great concern, but as population densities have increased, so has the amount of runoff created by impervious surfaces such as buildings and roads. Today, non-point source pollution is becoming a leading threat to the environment.

Jenifer McIntyre, a doctoral candidate at University of Washington, and her research team have been studying the effects of toxic runoff on fish and are looking for ways to improve water quality before it enters the Puget Sound. During rain events they collected water samples from the streets of Seattle and took them back to the lab where they had set up a rain garden designed to simulate how water is filtered in the natural environment. Part of the sample was filtered through the soil in the rain garden. Then, the filtered and unfiltered samples were placed in tanks along with juvenile coho salmon to study the response over a four-day period. The fish that were placed in the unfiltered storm runoff were dead within twelve hours, while the fish in the filtered runoff continued to survive. The study showed that it is possible for simple solutions, such as rain gardens, to increase the quality of water that is entering the ecosystem.

Efforts to restore dwindling stocks of natural populations of salmonids may be compromised by the runoff that will increase as human populations continue to rise and create new impermeable landscapes. Rain gardens and trees can help alleviate the amount of surface runoff that reaches rivers, but are not enough to account for all the runoff created by impervious surfaces. Infiltration or ponding basins can be used to collect excess urban runoff containing toxic chemicals. As the water is absorbed, the soil filters the pollutants and the groundwater is recharged. In newer developments these basins are more common, but there are still many cases where older developments need to be updated to accommodate modern expansion. This movement isn’t just among the urban planners; homeowners throughout California are getting involved by designing river-friendly landscapes, which beautify their garden while protecting the local wildlife.

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Miscellaneous

Though the fish pictured above may resemble a Halloween prop, they are in fact gobies that have been marked with calcein, a chemical that adheres to calcium-containing structures (bones) and fluoresces when exposed to light of a certain wavelength. Calcein is used for a wide variety of research applications, such as examining the deposition of growth bands in fish otoliths, identifying fish of hatchery origin, and estimating population size through mark-recapture experiments (e.g., Wilson et al. 1987, Mohler 1997, Negus & Tureson 2004). Fish can be exposed to calcein in a variety of ways, and study specimens are generally marked by immersion, allowing researchers to mark large numbers of individuals simultaneously.

In contrast to external marks or tags, calcein induced marks are not detectible by the naked eye and do not appear to have any detrimental effects on the fish’s health, swimming performance or its ability to hide from predators (a crucial factor in mark-recapture studies, which assume that marked and unmarked fish are equally likely to die or survive). The telltale fluorescent green glow of calcein only becomes visible under special detection lights containing various filters, which allow researches to distinguish previously marked fish from unmarked individuals. After several months the calcein mark fades, and it is no longer possible to detect the calcein on a live fish under the detection lights. However, the chemical is permanently incorporated into the internal, bony structures and examination of fish otoliths still allows for identification of previously marked fish.

The FDA currently limits the use of calcein on food fish (a fish that may be consumed by humans) to individuals weighing less than 2 grams. While this means that we can’t use calcein on salmon smolts during rotary screw trap efficiency trials, it may very well have an application in future studies requiring the marking of salmon fry – if so, we’ll be sure to share some pictures of glowing salmon!

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Miscellaneous

The City of Vallejo recently began a dredging project slated to remove approximately 500,000 cubic yards of sediment from the Vallejo Marina over the next 10 years in order to return the Marina to the originally permitted depths for safe navigation. The Vallejo Marina is adjacent the Mare Island Strait, which connects the Napa River to Suisun Bay and thus San Pablo Bay, a northern extension of the San Francisco Bay/Sacramento-San Joaquin River Delta estuary system (Bay-Delta estuary). The work is well timed, since the America’s Cup next summer will likely draw many boaters to the marina, which has been at limited capacity.

 Although no permanent detrimental effects such as undesired substrate alteration, decreased water quality, or loss of fish habitat are anticipated due to the dredging, during the permitting process , consultation with the U.S. Fish and Wildlife Service under Section 7 of the Endangered Species Act determined that the federally-listed Delta smelt (Hypomesus transpacificus) and its critical habitat, were present at or in the vicinity of the project location, and may be affected by the project. Delta smelt were listed as threatened in 1993 and critical habitat was designated the following year. The Bay-Delta estuary and specifically the Napa River provide important habitat to several species protected under the federal and state Endangered Species Acts, including Delta smelt. As such, a qualified biologist is required to be present for biological monitoring while dredging is occurring, and FISHBIO staff assisted with these efforts.

Delta smelt are a relatively small, slender, silvery fish native to the upper Sacramento-San Joaquin estuary.  They occur below Isleton on the Sacramento River, below Mossdale on the San Joaquin River and in the Suisun Bay. Spawning can occur in the Napa River and San Pablo Bay. There are a number of stressors believed to affect the Delta smelt including introduced competitors such as silversides, agricultural discharges, habitat loss, and water diversions at state and federal pumps. However, after a decade of declining abundance, the results of last year’s Fall Midwater Trawl Survey (FMWT) indicate that the Delta smelt population might finally be showing signs of improvement.

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Miscellaneous

This past weekend marked the 28th California Coastal Cleanup Day, an annual state-wide beach and river cleanup. FISHBIO’s Oakdale office joined the crowds of volunteers on the nearby Stanislaus River, while our Chico office participated in the Chico Creeks Cleanup Day. Volunteers amassed at numerous meeting locations around the state, eager to receive their assignments, grab trash bags, and head for the “hills”, beaches or what ever location they were assigned. Our Chico strike team, consisting of FISHBIO staff, Butte County Resource Conservation District staff, and two amazing volunteers, headed to upper Bidwell Park on Big Chico Creek where all trash was decimated on sight. Okay, in reality we threw it in our trash bags and hauled it back to a collection site where it was sorted for recyclables.

During last year’s Coastal Clean up a total of 71,794 volunteers picked up 1,345,776 pounds of debris state-wide, over 40% of which was recyclable. Interestingly, the Coastal Commission records the type of trash collected during the Coastal Cleanup Day. By far, the number one item is cigarette butts and filters, which make up 39.5% of all trash items collected between 1989 and 2011. Most cigarette filters are made of cellulose acetate, which is a non-degradable material. Food wrappers and containers come in at a not-so-close second place (10.4% of all items). There is also a prize for the most unusual item found, and this year the inland prize went to a volunteer in Redding who found a concrete statue of a rabbit.

California Coastal Cleanup Day usually attracts many volunteers who, like us at FISHBIO, find that a very important part of being in a community is actively contributing to keeping it clean. With all the volunteers who gave up their Saturday to help clean our local waterways, it was easy to see how much of a positive effect we can have on our environment and our community. At FISHBIO we feel honored to be involved in the Coastal Cleanup Day and we will be there next year, trash bags in hand.

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Miscellaneous

Caddisflies are common insects, in the order Trichoptera, which resemble moths as adults, but take on a considerably different form during their aquatic larval stage. In most regions caddisflies complete their life cycle in one year. Adults only live a couple of weeks, mate and deposit their eggs below the surface of rivers and streams. In a matter of weeks, the eggs hatch into larvae and they begin their architectural occupation. Most species of caddisfly larvae are case-makers that excrete silk from glands near their mouths, which is used to build a protective case out of sand, rock, twigs, and leaf pieces. Many people recognize them in this form, called periwinkles. Other species are net-making caddisflies that construct silk nets amongst aquatic vegetation, designed to capture food such as plankton and smaller aquatic insects. Much like butterflies, caddisflies pupate in a cocoon spun from silk, where over weeks or months they metamorphose into adults. Just before emergence (the “hatch”) the pupae become very active, and that is when they become extremely attractive to predators such as trout. Trout are not the only ones looking forward to the caddisfly hatch, anglers wait in anticipation, eager to take advantage of the trout feeding frenzy.

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Fish Report, Miscellaneous

One of the earth’s many marvels is its ability to preserve the past, which we uncover in the fossil record and can use to decipher the history of our world. The more fossils that we unearth, the more we learn about the past events that have made the planet what it is today. Currently, the oldest fossil record dates back roughly 3.4 billion years and research has shown that extinction is a natural part of life. Fossil history indicates that 95-99% of all species that have ever existed have gone extinct (see video “Extinction!”). A species can be eliminated from the planet by a variety of different causes including gradual geologic changes that happen over millions of years, or an event that causes mass extinction, such as an asteroid, which can happen over a shorter timescale. Regardless of the cause, it is estimated that on average one species goes extinct every four million years.

A recent report by the USGS published in the September issue of BioScience, describes the extinction of freshwater fishes in North America and compares this rate to extinctions over a geologic time scale. According to fossil record one species of freshwater fish goes extinct in North America every 3 million years (Stanley, 1985), but between 1898 and 2006 a total of 39 species and 18 subspecies have become extinct in North America. The study estimates that the modern rate of extinction has already increased to 877 every million years and the number of North American freshwater fishes to go extinct is likely to double to 53-86 species by 2050. Meanwhile, it is estimated that 83 species and subspecies of freshwater fishes have become extinct on different continents around the world including 57 in North America, 19 in Eurasia, 5 in Africa and Madagascar, 1 in South America and 1 throughout Oceania (Figure 1). While these numbers may appear to indicate that extinctions are more common in North America, the discrepancy likely relates to the number of fish investigations conducted in each region.

Figure 1. Number of fish estimated to become extinct by decade on the North America continent compared to other continents including Africa and Madagascar, Eurasia, South America, and Oceania (Burkhead, 2012).

A growing number of scientists believe that the recent spike in the extinction rate of freshwater fishes is most likely the result of human influences. Throughout the 20th century, rivers in North America became increasingly polluted and were modified for flood control and water conveyance. Dams have been important for the development of North America because they have decreased flood risk, generated power and stored water for human consumption, but these changes in the natural environment have eliminated much of the freshwater habitat and constricted fishes to smaller reaches. As the environment around them has been changing at a rapid pace, many freshwater fish species are having trouble adapting.

This post featured in our weekly e-newsletter, the Fish Report. You can subscribe to the Fish Report here.